Publications
Highlighted publications
S Uebbing, AA Kocher, M Baumgartner, Y Ji, S Bai, X Xing, T Nottoli & JP Noonan 2024. . Molecular Biology and Evolution 41:msae199
Here we screened for genetic signatures of evolutionary change in putative enhancer sequences across the mammalian tree-of-life and found that genes involved in gene regulation and development were particularly enriched for evolutionary change.
S Uebbing, J Gockley, SK Reilly, AA Kocher, E Geller, N Gandotra, C Scharfe, J Cotney & JP Noonan 2021. . PNAS 118:e2007049118
In this paper, we used a massively parallel enhancer assay to interrogate the effects of thousands of human-specific substitutions on the activity of the enhancers in which they reside.
Full publication list
(20) A Pal, MA Noble, M Morales, R Pal, M Baumgartner, JW Yang, KM Yim, S Uebbing & JP Noonan 2025. . Cell 188:1504-1523.e27
[ | Press: | Sequencing data on | Code on GitHub & and stable versions on Zenodo & ]
(19) S Uebbing, AA Kocher, M Baumgartner, Y Ji, S Bai, X Xing, T Nottoli & JP Noonan 2024. . Molecular Biology and Evolution 41:msae199
[ | Code on | Candidate enhancer dataset on ]
(18) AA Kocher, EV Dutrow, S Uebbing, KM Yim, MF Rosales Larios, M Baumgartner, T Nottoli & JP Noonan 2023. . Genome Biology 25:156
[ | Code on and stable version on ]
(17) E Geller, MA Noble, M Morales, J Gockley, D Emera, S Uebbing, JL Cotney & JP Noonan 2024. . Cell Reports 43:113693
[ | Blog post on the Node's | Code on | UCSC Genome Browser ]
(16) KL Gunawardhana*, L Hong*, T Rugira*, S Uebbing, J Kucharczak, S Mehta, D Karunamuni, B Cabrera-Mendoza, N Gandotra, C Scharfe, R Polimanti, JP Noonan & A Mani 2023. . Journal of Clinical Investigations 133:e160036
[ Highlighted in ]
(15) EV Dutrow, D Emera, K Yim, S Uebbing, AA Kocher, M Krenzer, T Nottoli, DB Burkhardt, S Krishnaswamy, A Louvi & JP Noonan 2022. . Nature Communications 13:304
[ Highlighted in | | Blog post on the Node's | ]
(14) S Uebbing*, J Gockley*, SK Reilly, AA Kocher, E Geller, N Gandotra, C Scharfe, J Cotney & JP Noonan 2021. . PNAS 118:e2007049118
[ Highlighted in | | Code on | UCSC Genome Browser | (PDF) ]
(13) J Chen, L Yang, R Zhang, S Uebbing, C Zhang, H Jiang, Y Lei, W Lv, F Tian, K Zhao & S He 2020. . Genome Biology and Evolution 12:3725—3737
(12) S Uebbing 2019. . Mammalian Species 51:26—33
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(11) S Uebbing 2018. . bioRxiv 401679
[ Code on ]
(10) M Wang, S Uebbing, Y Pawitan & DG Scofield 2018. . Molecular Ecology Resources 18:1247—1262
[ Code on ]
(9) R Sarro, AA Kocher, D Emera, S Uebbing, EV Dutrow, SD Weatherbee, T Nottoli & JP Noonan 2018. . Development 145:dev158550
[ bioRxiv preprint | Blog post on the Node's ]
(8) M Wang, S Uebbing & H Ellegren 2017. . Genome Biology and Evolution 9:1266—1279
(7) S Uebbing, A Künstner, H Mäkinen, N Backström, P Bolivar, R Burri, L Dutoit, CF Mugal, A Nater, B Aken, P Flicek, FJ Martin, SMJ Searle & H Ellegren 2016. . Molecular Ecology 25:2015—2028
[ Code on ]
(6) S Uebbing*, A Konzer*, L Xu*, N Backström, B Brunström, J Bergquist & H Ellegren 2015. . Molecular Biology and Evolution 32:2716—2725
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(5) L Smeds, V Warmuth, P Bolivar, S Uebbing, R Burri, A Suh, A Nater, S Bureš, LZ Garamszegi, S Hogner, J Moreno, A Qvarnström, M Ružić, S-A Sæther, G-P Sætre, J Török & H Ellegren 2015. . Nature Communications 6:7330
[ Press: EurekAlert! and ]
(4) L Smeds, T Kawakami, R Burri, P Bolivar, A Husby, A Qvarnström, S Uebbing & H Ellegren 2014. . Nature Communications 5:5448
[ Press: (in Swedish) | Selected by ]
(3) S Uebbing, A Künstner, H Mäkinen & H Ellegren 2013. . Genome Biology and Evolution 5:1555—1566
(2) J Chen, S Uebbing, N Gyllenstrand, U Lagercrantz, M Lascoux & T Källman 2012. . BMC Genomics 13:589
(1) H Ellegren, L Smeds, R Burri, PI Olason, N Backström, T Kawakami, A Künstner, H Mäkinen, K Nadachowska-Brzyska, A Qvarnström, S Uebbing & JBW Wolf 2012. . Nature 491:756—760
[ Highlighted in and | Press: , , and (in Swedish) | Recommended twice by | Blog post: | Highly cited paper according to | Used by Wikipedia (3x) ]