Barriga-Medina, N., Decker, T. Ramirez-Villacis, D.X., Le贸n-Reyes, A.E., Dong, V., Worley, C., Ruales, C., Pieterse, C.M.J. and Le贸n-Reyes, A. (2025). Exploring fungal pathogens to control the plant invasive Rubus niveus on Galapagos Island San Cristobal. Scientific Reports 15: 20358. .
Dai, R., Zhang, J., Liu, F., Xu, H., Qian, J.-M., Cheskis, S., Liu, W., Wang, B., Zhu, H., Pronk, L.J.U., Medema, M.H., de Jonge, R., Pieterse, C.M.J., Levy, A., Schlaeppi, K. and Bai, Y. (2025). Crop root bacterial and viral genomes reveal unexplored species and microbiome patterns. Cell 188: 2521-2539. .
Elhady, A., Alghanmi, L., Sheikh, A.H., Saad, M.M. and Hirt, H. (2025). Coexistence ecology of pathogen-inhibiting microbes in the phytobiome. Trends in Plant Science .
Mendel, M., Zuijdgeest, X.C.L., Van den Berg, F., Van der Meer, L., Elberse, J., Skiadas, P., Seidl, M.F., Van den Ackerveken, G. and de Jonge, R. (2025). Exploiting Pseudomonas syringae type 3 secretion to study effector contribution to disease in spinach. Molecular Plant-Microbe Interactions .
Pe帽a-Zu帽iga, E., Barriga-Medina, N., Ramirez-Villacis, D., Miranda-Guerrero, M., Pieterse, C.M.J., Raaijmakers, J.M. and Leon-Reyes, A . (2025). First report of Pectobacterium peruviense as the causal pathogen of blackleg and soft rot in Solanum tuberosum cv. Superchola in Canar, Ecuador. Plant Disease 1: .
Pe帽a-Zu帽iga, E., Barriga-Medina, N., Ramirez-Villacis, D., Llerena-Llerena, S., Pieterse, C.M.J., Raaijmakers, J.M. and Le贸n-Reyes, A . (2025). First report of Rhizoctonia solani AG-3 causing Black Scurf on Solanum tuberosum cv. Superchola in Cotopaxi, Ecuador. Plant Disease 1: .
Ramirez-Villacis, D.X., Leon-Reyes, A., Pieterse, C.M.J. and Raaijmakers, J.M. (2025). Born to rewild: reconnecting beneficial plant-microbiome alliances for resilient future crops. Cell Host & Microbe 33: 1241-1255. .
Secco, N., Sheikh, A.H. and Hirt, H. (2025). Insights into the role of N6-methyladenosine (m6A) in plant-virus interactions. Journal of Virology 99: e01598-24. .
Selten, G. (2025). Synthetic microbial communities: a systems approach to understanding root microbiome dynamics and functioning. Pp. 1-289, PhD Thesis Utrecht 木瓜福利影视. of thesis.
Selten, G. and De Jonge, R. (2025). Bacillus drives functional states in synthetic plant root bacterial communities. Genome Biology 26: 270. .
Selten, G., G贸mez-Repoll茅s, A., Lamouche, F., Radutoiu, S., and De Jonge, R. (2025). SyFi: Generating and using sequence fingerprints to distinguish SynCom isolates. Microbial Genomics11: 001461. .
Shao, Y.D., Gu, S.H., Peng, H.Y., Zhang, L.S., Li, S.D., Berendsen, R.L., Yang, T.J., Dong, C.X., Wei, Z., Xu, Y.C. and Shen, Q.R. (2025). Synergic interactions between Trichoderma and the soil microbiomes improve plant iron availability and growth. NPJ Biofilms and Microbiomes 11: 56. .
Singh, K,S, Suarez Duran, H., Del Pup, E., Zafra Delgado, O., Van Wees, S.C.M., Van der Hooft, J.J.J. and Medema, M.H. (2025). MEANtools integrates multi-omics data to identify metabolites and predict biosynthetic pathways. PLoS Biology23: e3003307. .
Skiadas, P., Riera Vidal, S., Dommisse, J., Mendel, M. N., Elberse, J., Van den Ackerveken, G., de Jonge, R., and Seidl, M. F. (2024). Pangenome graph analysis reveals extensive effector copy-number variation in spinach downy mildew. PLoS Genetics, 20: e1011452. .
Song, Y., Atza, E., S谩nchez-Gil, J.J., Akkermans, D., de Jonge, R., De Rooij, P.G.H., Kakembo, D., Bakker, P.A.H.M., Pieterse, C.M.J., Budko, N.V. and Berendsen, R.L. (2025). Seed tuber microbiome can predict growth potential of potato varieties. Nature Microbiology 10: 28-40.
Song, Y. and Berendsen, R.L. (2025). Potato crop performance is predicted by tuber microbiome. Nature Microbiology 10: 8-9. .
Spooren, J. (2025). Plant-driven assembly of disease-suppressive microbiomes. Pp. 1-229, PhD Thesis Utrecht 木瓜福利影视. of thesis.
Steenbergh, A.K., Arts, G., Bakker, P.A.H.M., De Boer, W., Glandorf, D.C.M., Ter Horst, M.M.S., De Kogel, W.J. and K枚hl, J. (2025). Using problem formulation for an efficient, fit-for-purpose risk assessment of microbial plant protection products. Environmental Sciences Europe 37: 24..
Uribe Acosta, M., Pascale, A., Zhou, J., Stringlis, I.A. and Pieterse, C.M.J. (2025). Roots: metabolic architects of beneficial microbiome assembly. Plant Physiology 199: kiaf349. .
Zhou, J., Uribe Acosta, M., Stassen, M.J.J., Qi, R., de Jonge, R., White, F., Kramer, G., Dong, L., Pieterse, C.M.J. and Stringlis, I.A. (2025). Arabidiopsis root defense barriers support beneficial interactions with rhizobacterium Pseudomonas simiae WCS417. New Phytologist XX: XXX-XXX. .
Van Bentum, S., O'Banion, B., Gates, A., Van Pelt, J.A., Bakker, P.A.H.M., Pieterse, C.M.J., Lebeis, S.L. and Berendsen, R.L. (2025). Microbiome responses to natural Fusarium infection in field-grown soybean plants. Plant and Soil XX: XXX-XXX. .
